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What is Flow Cytometry?
The Microbiology & Immunology Flow Cytometry Core Facility provides the researchers of UAMS with an immensely powerful and diverse tool to measure multiple physical characteristics of individual cells in suspension. The flow cytometer can indicate relative cell size and density or complexity by measuring forward- and side-scattered laser light, respectively. In addition, the flow cytometer can measure relative fluorescence from fluorescent probes which bind to specific cell-associated molecules. These fluorescent probes are often fluorochrome-labeled antibodies specific for cell surface molecules, but may also be nucleic acid probes (e.g. Propidium Iodide), cell function probes (e.g. Indo-1), or fluorescent proteins (e.g. GFP). The probes can be applied to most types of cells, including bacteria. As the labeled cells flow past a laser beam, the probes fluoresce, and the emitted light is directed to detectors which translate the light signals into information concerning the relative fluorescent intensity associated with each cell.
Flow cytometry measures the percentage of cells in a population with each (or multiple) fluorescent probe(s) attached. The cell sorter is capable of sorting specific cell populations from a mixture of cells based on fluorescence profiles.
The UAMS Flow Cytometry Core Facility has two instruments:
BD FacsCalibur

The FACSCalibur has 4 fluorescence detectors plus forward- and side-scatter detectors. See the information below to determine which fluorochromes may be used.
| Excitation Laser |
Detection Filter |
Detector |
Example |
| 488 nm (blue) |
488/10 (483-493 nm) |
FSC Diode |
FSC |
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488/10 (483-493 nm) |
SSC PMT |
SSC |
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530/30 (515-545 nm) |
FL-1 PMT |
FITC |
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585/42 (564-606 nm) |
FL-2 PMT |
PE |
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670LP (>/= 670 nm) |
FL-3 PMT |
PerCP |
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| 635 nm (red) |
661/16 (653-669 nm) |
FL-4 PMT |
APC |
Sort Capability: Capture rate is 300 cells/sec; aerosol-free; cells sorted into one 50 ml conical tube at a time (10 min per tube).
| Sort Mode |
Cell Recovery |
SortPurity |
| Single-Cell |
low |
high |
| Recovery |
high |
low |
| Exclusion |
medium |
high |
FacsAria (primarily used for sorting)

The FACSAria has 9 fluorescence detectors plus forward- and side-scatter detectors. See the information below to determine which fluorochromes may be used.
All lasers are Class IIIb.
| Excitation Laser |
Detection Filter |
Detector |
Example |
| 488 nm (blue) |
488/10 (483-493 nm) |
FSC Diode |
FSC only |
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780/60 (750-810 nm) |
PMT A |
PE-Cy7 |
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695/40 (675-715 nm) |
PMT B |
PerCP Cy5.5 |
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610/20 (600-620 nm) |
PMT C |
PE-Texas Red |
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576/26 (563-589 nm) |
PMT D |
PE |
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530/30 (515-545 nm) |
PMT E |
FITC |
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488/10 (483-493 nm) |
PMT F |
SSC only |
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| 633 nm (red) |
780/60 (750-810 nm) |
PMT A |
APC-Cy7 |
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660/20 (650-670 nm) |
PMT B |
APC |
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| 407 nm (violet) |
530/30 (515-545 nm) |
PMT A |
Alexa-Fluor 430 |
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450/40 (430-470 nm) |
PMT B |
DAPI |
Nozzles: 70 micron (up to 10 micron cells) and 100 micron (10-15 micron cells)
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This site created and maintained by Andrea Fox and UAMS Media Services
All contents copyright 2007
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